slidergrid, branch HEAD

Change to ISC license

2020-01-02T09:40:42Z

commit e86bb061fd2bdf9241de4ea11d28f72dd7f9debd parent ce975080d4afb2c66265f61f2cf93ff2937007bf Author: Anders Damsgaard Date: Thu, 2 Jan 2020 10:40:42 +0100 Change to ISC license

Update README

2019-09-07T06:25:37Z

commit ce975080d4afb2c66265f61f2cf93ff2937007bf parent 01f9042427f6b9e5933c803f55b9fdafe5b4a33c Author: Anders Damsgaard Date: Sat, 7 Sep 2019 08:25:37 +0200 Update README

improve documentation

2016-05-04T20:10:02Z

commit 01f9042427f6b9e5933c803f55b9fdafe5b4a33c parent 897289bb9cc3233e556ccd4b863cdfaf4dea29b0 Author: Anders Damsgaard Christensen Date: Wed, 4 May 2016 13:10:02 -0700 improve documentation

add system of equations for 3d beam

2016-05-02T16:58:42Z

commit 897289bb9cc3233e556ccd4b863cdfaf4dea29b0 parent 01b81b008518de59f62d4471b397364dd6b78f9a Author: Anders Damsgaard Christensen Date: Mon, 2 May 2016 09:58:42 -0700 add system of equations for 3d beam

simplify relative velocity calculation

2016-04-20T18:47:16Z

commit 01b81b008518de59f62d4471b397364dd6b78f9a parent 7226d7854eb5fe81d9ea7c55f6bf134a462991c9 Author: Anders Damsgaard Christensen Date: Wed, 20 Apr 2016 11:47:16 -0700 simplify relative velocity calculation

the contact velocity should use normal vector instead of distance vector

2016-04-20T18:24:44Z

commit 7226d7854eb5fe81d9ea7c55f6bf134a462991c9 parent 40de282160ee90a414a91f45c48f1a8bfd2bd6bc Author: Anders Damsgaard Christensen Date: Wed, 20 Apr 2016 11:24:44 -0700 the contact velocity should use normal vector instead of distance vector

insert intro text

2016-04-19T23:14:52Z

commit 40de282160ee90a414a91f45c48f1a8bfd2bd6bc parent 476c2046fbb6ac2eef3d7a24403db6918e665dde Author: Anders Damsgaard Christensen Date: Tue, 19 Apr 2016 16:14:52 -0700 insert intro text

add twist test

2016-04-19T23:08:17Z

commit 476c2046fbb6ac2eef3d7a24403db6918e665dde parent 399bec23e552877fa5063f68fed06706d4d109eb Author: Anders Damsgaard Christensen Date: Tue, 19 Apr 2016 16:08:17 -0700 add twist test

ignore test binaries and output folders

2016-04-19T23:07:50Z

commit 399bec23e552877fa5063f68fed06706d4d109eb parent f5386a896ba503a6afe938bdb950890b44bb1727 Author: Anders Damsgaard Christensen Date: Tue, 19 Apr 2016 16:07:50 -0700 ignore test binaries and output folders

add example simulation, remove extra ignores

2016-04-19T23:06:20Z

commit f5386a896ba503a6afe938bdb950890b44bb1727 parent dbdc108fdbb4c7ac7367ca6d93b5987ce0707d44 Author: Anders Damsgaard Christensen Date: Tue, 19 Apr 2016 16:06:20 -0700 add example simulation, remove extra ignores

ignore latex build files

2016-04-19T23:05:48Z

commit dbdc108fdbb4c7ac7367ca6d93b5987ce0707d44 parent 2e3e599c10ff71550ea323dc5d1a7b9a86fb04bd Author: Anders Damsgaard Christensen Date: Tue, 19 Apr 2016 16:05:48 -0700 ignore latex build files

add outline for documentation of methods

2016-04-19T23:04:13Z

commit 2e3e599c10ff71550ea323dc5d1a7b9a86fb04bd parent 7394876c00fe2230bb855621da3aa936ddd35baf Author: Anders Damsgaard Christensen Date: Tue, 19 Apr 2016 16:04:13 -0700 add outline for documentation of methods

add Kelvin-Voigt parameters for twist and bending

2016-04-19T19:09:55Z

commit 7394876c00fe2230bb855621da3aa936ddd35baf parent bbf7010bcf7ceae41f9d8bf35c2f7d1f1e66ae78 Author: Anders Damsgaard Christensen Date: Tue, 19 Apr 2016 12:09:55 -0700 add Kelvin-Voigt parameters for twist and bending

resolve twist on bond

2016-04-18T23:06:46Z

commit bbf7010bcf7ceae41f9d8bf35c2f7d1f1e66ae78 parent d852181baa63f618bea35aa6d8d6053763688920 Author: Anders Damsgaard Christensen Date: Mon, 18 Apr 2016 16:06:46 -0700 resolve twist on bond

add arrays for twisting and bending of the bond

2016-04-18T21:55:29Z

commit d852181baa63f618bea35aa6d8d6053763688920 parent 86fc15639894a4f2ebaaba73678afc6245e2d8e7 Author: Anders Damsgaard Christensen Date: Mon, 18 Apr 2016 14:55:29 -0700 add arrays for twisting and bending of the bond

fix normal-impact simulation parameters

2016-04-15T21:52:12Z

commit 86fc15639894a4f2ebaaba73678afc6245e2d8e7 parent 8767c0aedd2863ea48fb447851a62fa232a9a8f1 Author: Anders Damsgaard Date: Fri, 15 Apr 2016 14:52:12 -0700 fix normal-impact simulation parameters

fix format of long int

2016-04-14T22:32:00Z

commit 8767c0aedd2863ea48fb447851a62fa232a9a8f1 parent 04efc5912ba233ff656bd21008535f71bbaa7404 Author: Anders Damsgaard Date: Thu, 14 Apr 2016 15:32:00 -0700 fix format of long int

add debug output for tangential components

2016-04-14T22:29:12Z

commit 04efc5912ba233ff656bd21008535f71bbaa7404 parent 1e22f447f8ca996ea6d0fbb9edff3e0af18f7591 Author: Anders Damsgaard Date: Thu, 14 Apr 2016 15:29:12 -0700 add debug output for tangential components

include missing parameters to printf statement

2016-04-14T20:09:43Z

commit 1e22f447f8ca996ea6d0fbb9edff3e0af18f7591 parent c0247d0e47f5d802895fb09e6e89e66b1c69d08c Author: Anders Damsgaard Date: Thu, 14 Apr 2016 13:09:43 -0700 include missing parameters to printf statement

include rotational kinematics in debug output

2016-04-14T20:04:10Z

commit c0247d0e47f5d802895fb09e6e89e66b1c69d08c parent 1fd2ff5c433e192a246da1919a7346ec6ec3dafc Author: Anders Damsgaard Date: Thu, 14 Apr 2016 13:04:10 -0700 include rotational kinematics in debug output

fix makefile targets

2016-04-14T19:38:12Z

commit 1fd2ff5c433e192a246da1919a7346ec6ec3dafc parent 7db54ba64467af8531138bebce18c069a29222d6 Author: Anders Damsgaard Date: Thu, 14 Apr 2016 12:38:12 -0700 fix makefile targets

increase runtime of shear example

2016-04-14T19:36:49Z

commit 7db54ba64467af8531138bebce18c069a29222d6 parent dea4dc1c1b2f140a281656f0f58b35625d90d027 Author: Anders Damsgaard Date: Thu, 14 Apr 2016 12:36:49 -0700 increase runtime of shear example

improve debugging output, save bond-parallel displacement as scalar

2016-04-14T19:24:45Z

commit dea4dc1c1b2f140a281656f0f58b35625d90d027 parent 3246bf804bdc996d1bd737dbeb3acadad09fae2d Author: Anders Damsgaard Date: Thu, 14 Apr 2016 12:24:45 -0700 improve debugging output, save bond-parallel displacement as scalar

add debugging information for bond deformation

2016-04-12T22:03:53Z

commit 3246bf804bdc996d1bd737dbeb3acadad09fae2d parent f42ed36e0b3fd01a46ca70e29a11c5ded205f809 Author: Anders Damsgaard Date: Tue, 12 Apr 2016 15:03:53 -0700 add debugging information for bond deformation

include simulation id in file name

2016-04-05T21:17:57Z

commit f42ed36e0b3fd01a46ca70e29a11c5ded205f809 parent 0098826894734f6e3f5db2e76a707860f42c8c7e Author: Anders Damsgaard Date: Tue, 5 Apr 2016 14:17:57 -0700 include simulation id in file name

enable shear resisting forces

2016-04-05T21:16:13Z

commit 0098826894734f6e3f5db2e76a707860f42c8c7e parent bb119cc1c3bf9c0fe083b7137eadd76e39f0d0f5 Author: Anders Damsgaard Date: Tue, 5 Apr 2016 14:16:13 -0700 enable shear resisting forces

add shear test

2016-04-05T21:04:40Z

commit bb119cc1c3bf9c0fe083b7137eadd76e39f0d0f5 parent 0f0bccee849d4eb219805af002c0877ab961c8d6 Author: Anders Damsgaard Date: Tue, 5 Apr 2016 14:04:40 -0700 add shear test

add parantheses to avoid warning

2016-04-05T20:57:43Z

commit 0f0bccee849d4eb219805af002c0877ab961c8d6 parent 56d818be2914d596c94e0b4968a04f37ca20a759 Author: Anders Damsgaard Date: Tue, 5 Apr 2016 13:57:43 -0700 add parantheses to avoid warning

extend elasticity testing

2016-04-05T20:55:53Z

commit 56d818be2914d596c94e0b4968a04f37ca20a759 parent d5fcc2684a0bcfda20f1d29e2aab1b830c0190d7 Author: Anders Damsgaard Date: Tue, 5 Apr 2016 13:55:53 -0700 extend elasticity testing

version is now a number, disable debug output

2016-04-05T19:39:25Z

commit d5fcc2684a0bcfda20f1d29e2aab1b830c0190d7 parent 067dee70d100c7598d44a8a595e50a32f90c8578 Author: Anders Damsgaard Date: Tue, 5 Apr 2016 12:39:25 -0700 version is now a number, disable debug output

improve data handling in postprocessing module

2016-04-05T19:35:23Z

commit 067dee70d100c7598d44a8a595e50a32f90c8578 parent c75d7fcd51c3d68c8063daf7493815f71331bb39 Author: Anders Damsgaard Date: Tue, 5 Apr 2016 12:35:23 -0700 improve data handling in postprocessing module

write and read simulation status file

2016-04-05T16:10:31Z

commit c75d7fcd51c3d68c8063daf7493815f71331bb39 parent c480661f83d878f15281bef803e8a6dbb174b5f6 Author: Anders Damsgaard Date: Tue, 5 Apr 2016 09:10:31 -0700 write and read simulation status file

change class name

2016-04-04T22:18:02Z

commit c480661f83d878f15281bef803e8a6dbb174b5f6 parent faff3bde365e55629dc9c2414e30d2dcbf96d3ef Author: Anders Damsgaard Date: Mon, 4 Apr 2016 15:18:02 -0700 change class name

change VERSION to double

2016-04-04T22:16:42Z

commit faff3bde365e55629dc9c2414e30d2dcbf96d3ef parent d5eaf125740490f062884823edb1fead98f8efbb Author: Anders Damsgaard Date: Mon, 4 Apr 2016 15:16:42 -0700 change VERSION to double

change help text

2016-03-30T21:54:52Z

commit d5eaf125740490f062884823edb1fead98f8efbb parent 9d76534f6962e6b8b06c3fed5b277320b834e056 Author: Anders Damsgaard Date: Wed, 30 Mar 2016 14:54:52 -0700 change help text

fix arguments

2016-03-30T21:25:20Z

commit 9d76534f6962e6b8b06c3fed5b277320b834e056 parent 94f9fb9eafe08a8193268b2375418756a34d8dbb Author: Anders Damsgaard Date: Wed, 30 Mar 2016 14:25:20 -0700 fix arguments

change general data format, read general information in python

2016-03-30T21:23:06Z

commit 94f9fb9eafe08a8193268b2375418756a34d8dbb parent 5a85affe06c9ef33083476a69ceddd03b0eb4155 Author: Anders Damsgaard Date: Wed, 30 Mar 2016 14:23:06 -0700 change general data format, read general information in python

plot translational and rotational energy separately

2016-03-30T21:13:35Z

commit 5a85affe06c9ef33083476a69ceddd03b0eb4155 parent 5923f961afa2aca4593b8c4004ae6c5816e7250e Author: Anders Damsgaard Date: Wed, 30 Mar 2016 14:13:35 -0700 plot translational and rotational energy separately

determine translational kinetic energy

2016-03-30T21:08:04Z

commit 5923f961afa2aca4593b8c4004ae6c5816e7250e parent b7c2f91bf3969f60232019e78e937aaa8d894f1f Author: Anders Damsgaard Date: Wed, 30 Mar 2016 14:08:04 -0700 determine translational kinetic energy

update slider plotting routine with new variable names

2016-03-30T21:02:24Z

commit b7c2f91bf3969f60232019e78e937aaa8d894f1f parent 2186c59a2858b1645b8f09a0cea58e87358aeda0 Author: Anders Damsgaard Date: Wed, 30 Mar 2016 14:02:24 -0700 update slider plotting routine with new variable names

save plot as PDF

2016-03-30T20:56:15Z

commit 2186c59a2858b1645b8f09a0cea58e87358aeda0 parent 64ff0d3cc5fff3d9f05502d7db911e75ebc1731d Author: Anders Damsgaard Date: Wed, 30 Mar 2016 13:56:15 -0700 save plot as PDF

add outline to plot kinetic energy over time

2016-03-30T20:51:39Z

commit 64ff0d3cc5fff3d9f05502d7db911e75ebc1731d parent 18aacc6e97a8d8b41b307dbd97051738a3218759 Author: Anders Damsgaard Date: Wed, 30 Mar 2016 13:51:39 -0700 add outline to plot kinetic energy over time

write all kinematic values to text file

2016-03-30T20:37:43Z

commit 18aacc6e97a8d8b41b307dbd97051738a3218759 parent b315e491a0bfd7a53ef281f41933220f8de8e0c2 Author: Anders Damsgaard Date: Wed, 30 Mar 2016 13:37:43 -0700 write all kinematic values to text file

fix function call

2016-03-30T17:54:29Z

commit b315e491a0bfd7a53ef281f41933220f8de8e0c2 parent c1d935d91f4cf966769161facb856ed8c426f859 Author: Anders Damsgaard Date: Wed, 30 Mar 2016 10:54:29 -0700 fix function call

add viscous and non-viscous damping

2016-03-30T17:51:54Z

commit c1d935d91f4cf966769161facb856ed8c426f859 parent 25a1b1a29874237888551abd9d157460aedac79f Author: Anders Damsgaard Date: Wed, 30 Mar 2016 10:51:54 -0700 add viscous and non-viscous damping

add a descriptive sentence

2016-03-23T22:24:51Z

commit 25a1b1a29874237888551abd9d157460aedac79f parent 1414f822da9c0bc70985abc65dfbca045da8cae9 Author: Anders Damsgaard Date: Wed, 23 Mar 2016 15:24:51 -0700 add a descriptive sentence

determine bond-parallel and bond-normal deformation inseparate functions

2016-03-23T22:22:10Z

commit 1414f822da9c0bc70985abc65dfbca045da8cae9 parent 9f1ef4954a24c00f095bfafec2afb26292b947b8 Author: Anders Damsgaard Date: Wed, 23 Mar 2016 15:22:10 -0700 determine bond-parallel and bond-normal deformation inseparate functions

fix contact model parameter names

2016-03-23T20:40:39Z

commit 9f1ef4954a24c00f095bfafec2afb26292b947b8 parent a4d6a166ba3981c6da4c01752f698f466c21a27e Author: Anders Damsgaard Date: Wed, 23 Mar 2016 13:40:39 -0700 fix contact model parameter names

specify that the stiffness refers to the spring in the Kelvin-Voigt model

2016-03-23T20:36:46Z

commit a4d6a166ba3981c6da4c01752f698f466c21a27e parent 3f9329b2ef127c8ae24bb399ebbf3697fda31011 Author: Anders Damsgaard Date: Wed, 23 Mar 2016 13:36:46 -0700 specify that the stiffness refers to the spring in the Kelvin-Voigt model

add static keyword to allow inclusion in several objects

2016-03-23T20:14:31Z

commit 3f9329b2ef127c8ae24bb399ebbf3697fda31011 parent 71351228ef6ae1c6fc4b1205be8552623d683cf1 Author: Anders Damsgaard Date: Wed, 23 Mar 2016 13:14:31 -0700 add static keyword to allow inclusion in several objects

remove unused iteration variable

2016-03-23T20:08:30Z

commit 71351228ef6ae1c6fc4b1205be8552623d683cf1 parent 142e50e1fd1c67f329d92bbbf7bf9ae0e73b32eb Author: Anders Damsgaard Date: Wed, 23 Mar 2016 13:08:30 -0700 remove unused iteration variable

fix relative paths

2016-03-23T20:07:43Z

commit 142e50e1fd1c67f329d92bbbf7bf9ae0e73b32eb parent 8452df073c531a06d60ba75acbc4adde82c63322 Author: Anders Damsgaard Date: Wed, 23 Mar 2016 13:07:43 -0700 fix relative paths

put test into subfolder

2016-03-23T20:04:43Z

commit 8452df073c531a06d60ba75acbc4adde82c63322 parent faa21e62b93f6998ea8a3108b8b58629a8ed8d5d Author: Anders Damsgaard Date: Wed, 23 Mar 2016 13:04:43 -0700 put test into subfolder

put tests in separate folder

2016-03-23T20:01:08Z

commit faa21e62b93f6998ea8a3108b8b58629a8ed8d5d parent c3e0b8d528cae8ad2e8b04ff4ea49ca565c50504 Author: Anders Damsgaard Date: Wed, 23 Mar 2016 13:01:08 -0700 put tests in separate folder

add precaution on instabilities with backwards finite differences

2016-03-23T19:13:49Z

commit c3e0b8d528cae8ad2e8b04ff4ea49ca565c50504 parent 2c8a1eb434b536ba5a6bd764c8a40ff975e78a97 Author: Anders Damsgaard Date: Wed, 23 Mar 2016 12:13:49 -0700 add precaution on instabilities with backwards finite differences

improve stability with central finite differences for displacement

2016-03-23T19:13:07Z

commit 2c8a1eb434b536ba5a6bd764c8a40ff975e78a97 parent 29dcc40d11391606b585ee8c16d62ffab38d835d Author: Anders Damsgaard Date: Wed, 23 Mar 2016 12:13:07 -0700 improve stability with central finite differences for displacement

stable behavior with elastic bond model

2016-03-23T19:11:05Z

commit 29dcc40d11391606b585ee8c16d62ffab38d835d parent 22987b940714da80cd5638c1bd3367747956b4ee Author: Anders Damsgaard Date: Wed, 23 Mar 2016 12:11:05 -0700 stable behavior with elastic bond model

break long lines (width > 80 char)

2016-03-23T17:55:58Z

commit 22987b940714da80cd5638c1bd3367747956b4ee parent 6d61a36522e6fadaddcc2c6a4c4289f7a0add6b5 Author: Anders Damsgaard Date: Wed, 23 Mar 2016 10:55:58 -0700 break long lines (width > 80 char)

remove unnecessary newline

2016-03-22T22:58:39Z

commit 6d61a36522e6fadaddcc2c6a4c4289f7a0add6b5 parent 126cdf9bc281c64712cc4cdb5febe0b2f649b456 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 15:58:39 -0700 remove unnecessary newline

remove unused function, initialize force and torque to 0 during initialization

2016-03-22T22:57:53Z

commit 126cdf9bc281c64712cc4cdb5febe0b2f649b456 parent c6e2a96799b3fc1b5c926bace6763524480d5417 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 15:57:53 -0700 remove unused function, initialize force and torque to 0 during initialization

add const keywords, suppress some debug output

2016-03-22T22:15:23Z

commit c6e2a96799b3fc1b5c926bace6763524480d5417 parent 651d6ad14183acc05109edf9fb4569dda244cde1 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 15:15:23 -0700 add const keywords, suppress some debug output

fix index, set velocity for first slider

2016-03-22T21:59:10Z

commit 651d6ad14183acc05109edf9fb4569dda244cde1 parent 13fd2f5473280a782faf7f4c94dd56a0ff2a7d41 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 14:59:10 -0700 fix index, set velocity for first slider

set initial distance vector when first finding contacts

2016-03-22T21:57:50Z

commit 13fd2f5473280a782faf7f4c94dd56a0ff2a7d41 parent bb5690a5dfaf1895126205eceaf2f36aff4155a4 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 14:57:50 -0700 set initial distance vector when first finding contacts

show last output file in status, add debugging output

2016-03-22T21:50:34Z

commit bb5690a5dfaf1895126205eceaf2f36aff4155a4 parent e74cb395a9425ba9819ff606866e77e5ee9dfa93 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 14:50:34 -0700 show last output file in status, add debugging output

fix function calls

2016-03-22T21:34:12Z

commit e74cb395a9425ba9819ff606866e77e5ee9dfa93 parent 9361f609b8753a5ee25000d7ff5269592b8f82ec Author: Anders Damsgaard Date: Tue, 22 Mar 2016 14:34:12 -0700 fix function calls

find and save projected future slider position

2016-03-22T21:31:48Z

commit 9361f609b8753a5ee25000d7ff5269592b8f82ec parent ed285da822b8be868f38c8cc1419a2d5fa783592 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 14:31:48 -0700 find and save projected future slider position

fix debug output in interaction function

2016-03-22T20:26:43Z

commit ed285da822b8be868f38c8cc1419a2d5fa783592 parent be3b8690a7ce4f86cc57cc4d3b31a8941b9a76fb Author: Anders Damsgaard Date: Tue, 22 Mar 2016 13:26:43 -0700 fix debug output in interaction function

fix force sum, disable debug output

2016-03-22T20:22:47Z

commit be3b8690a7ce4f86cc57cc4d3b31a8941b9a76fb parent ffce95073aabb7c780a4ccb40e3c16cc8cb35a1e Author: Anders Damsgaard Date: Tue, 22 Mar 2016 13:22:47 -0700 fix force sum, disable debug output

fix divide by zero error, remove object files in source folder

2016-03-22T20:16:13Z

commit ffce95073aabb7c780a4ccb40e3c16cc8cb35a1e parent 4dec9bb3157cedd9272eb7b2a9938c12ededcd24 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 13:16:13 -0700 fix divide by zero error, remove object files in source folder

initialize slider values in setup_simulation

2016-03-22T19:35:47Z

commit 4dec9bb3157cedd9272eb7b2a9938c12ededcd24 parent 14e8686be58c808ac6a040a280c5f117ff13516f Author: Anders Damsgaard Date: Tue, 22 Mar 2016 12:35:47 -0700 initialize slider values in setup_simulation

set default values for remaining slider parameters

2016-03-22T19:32:22Z

commit 14e8686be58c808ac6a040a280c5f117ff13516f parent 5956528c9e7451c2d932ce45de64d94da384150b Author: Anders Damsgaard Date: Tue, 22 Mar 2016 12:32:22 -0700 set default values for remaining slider parameters

pass by reference, not value

2016-03-22T19:07:58Z

commit 5956528c9e7451c2d932ce45de64d94da384150b parent a86f1907864ebdac8a032659a16a356964815bd6 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 12:07:58 -0700 pass by reference, not value

decrease verbosity of debug output

2016-03-22T19:02:35Z

commit a86f1907864ebdac8a032659a16a356964815bd6 parent 8e7d2be14d5283bfd8230b8eef858bbbca8c2723 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 12:02:35 -0700 decrease verbosity of debug output

pass sliders as pointers in initialization

2016-03-22T18:56:45Z

commit 8e7d2be14d5283bfd8230b8eef858bbbca8c2723 parent 762b3f6943d2c21d2ef469462691efae7aaa92d5 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 11:56:45 -0700 pass sliders as pointers in initialization

include debug header in main

2016-03-22T18:32:36Z

commit 762b3f6943d2c21d2ef469462691efae7aaa92d5 parent 98510995b3b02e74f91395782889154b236d517a Author: Anders Damsgaard Date: Tue, 22 Mar 2016 11:32:36 -0700 include debug header in main

avoid unused variable warning

2016-03-22T18:30:17Z

commit 98510995b3b02e74f91395782889154b236d517a parent 75d805810911e239896f6865ab9af0dc10b2f2ed Author: Anders Damsgaard Date: Tue, 22 Mar 2016 11:30:17 -0700 avoid unused variable warning

add debug information for total slider force balance

2016-03-22T18:28:12Z

commit 75d805810911e239896f6865ab9af0dc10b2f2ed parent f592a85d991ec58487fb39ba92a7eb3f32b39f75 Author: Anders Damsgaard Date: Tue, 22 Mar 2016 11:28:12 -0700 add debug information for total slider force balance

pass pointer to simulation structure

2016-03-17T23:56:12Z

commit f592a85d991ec58487fb39ba92a7eb3f32b39f75 parent d45ab4c31a7de996f1785ca5d8fb7bc17c06c9dc Author: Anders Damsgaard Date: Thu, 17 Mar 2016 16:56:12 -0700 pass pointer to simulation structure

pass pointer to structure instead of structure

2016-03-17T23:49:15Z

commit d45ab4c31a7de996f1785ca5d8fb7bc17c06c9dc parent 695b94d0b8c81fbbcfca476c06eda313facaf72c Author: Anders Damsgaard Date: Thu, 17 Mar 2016 16:49:15 -0700 pass pointer to structure instead of structure

save initial conditions, add function to write all output files

2016-03-17T23:41:37Z

commit 695b94d0b8c81fbbcfca476c06eda313facaf72c parent 153343f86817343c65a421adafecbb2769977911 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 16:41:37 -0700 save initial conditions, add function to write all output files

fix vtk file parsing

2016-03-17T23:16:53Z

commit 153343f86817343c65a421adafecbb2769977911 parent aa7f30b3e772dca9dfc4bc189437b5c3acbeb6d3 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 16:16:53 -0700 fix vtk file parsing

fix warnings for output folder creation

2016-03-17T22:49:54Z

commit aa7f30b3e772dca9dfc4bc189437b5c3acbeb6d3 parent 9d4d792211a8c8e0a94dfa6d22b90e9ed6c7c608 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 15:49:54 -0700 fix warnings for output folder creation

shorten test, do not read .vti files with postprocessing function

2016-03-17T22:48:28Z

commit 9d4d792211a8c8e0a94dfa6d22b90e9ed6c7c608 parent 1e93ae46150e61b7df00a55d2eee080bc43fae4e Author: Anders Damsgaard Date: Thu, 17 Mar 2016 15:48:28 -0700 shorten test, do not read .vti files with postprocessing function

write slider information to vtk file

2016-03-17T22:46:26Z

commit 1e93ae46150e61b7df00a55d2eee080bc43fae4e parent a5be42f1e7f01ede7d541668d2dba523bb752881 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 15:46:26 -0700 write slider information to vtk file

add function prototype to header

2016-03-17T22:41:44Z

commit a5be42f1e7f01ede7d541668d2dba523bb752881 parent 61541ba4e7dc9660c1dd91aba87dc25c282682c7 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 15:41:44 -0700 add function prototype to header

add function to write to VTK files

2016-03-17T22:38:43Z

commit 61541ba4e7dc9660c1dd91aba87dc25c282682c7 parent 3008c9edbbaac56bcfe215ade860e106f79127b8 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 15:38:43 -0700 add function to write to VTK files

update visualization call in makefile

2016-03-17T21:08:44Z

commit 3008c9edbbaac56bcfe215ade860e106f79127b8 parent a6eccd98dafded3ca40fdbe13dfa3b8727d90e11 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 14:08:44 -0700 update visualization call in makefile

fix parsing of args without option

2016-03-17T21:07:21Z

commit a6eccd98dafded3ca40fdbe13dfa3b8727d90e11 parent 1a2317b2dc0f603bfe2ace1f0d5d93b40efd6a57 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 14:07:21 -0700 fix parsing of args without option

parse options sensibly

2016-03-17T20:54:37Z

commit 1a2317b2dc0f603bfe2ace1f0d5d93b40efd6a57 parent 9a7c3f858d084821a9aba2343c74f8607fbffed2 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 13:54:37 -0700 parse options sensibly

rename postprocessing script, restructure test

2016-03-17T20:07:19Z

commit 9a7c3f858d084821a9aba2343c74f8607fbffed2 parent 5420c99b87bf0d3a043aaf7d8ad2ba6dc972bfda Author: Anders Damsgaard Date: Thu, 17 Mar 2016 13:07:19 -0700 rename postprocessing script, restructure test

do not open png files, add perturbation

2016-03-17T18:25:26Z

commit 5420c99b87bf0d3a043aaf7d8ad2ba6dc972bfda parent 2148944e1fe65b0eec1d0179e0ec41eb21f54eca Author: Anders Damsgaard Date: Thu, 17 Mar 2016 11:25:26 -0700 do not open png files, add perturbation

fix output file number

2016-03-17T18:01:35Z

commit 2148944e1fe65b0eec1d0179e0ec41eb21f54eca parent ff88f8d48e99c57f52f22471765a1bd9ad2e00fc Author: Anders Damsgaard Date: Thu, 17 Mar 2016 11:01:35 -0700 fix output file number

fix output files, add simple output visualization script

2016-03-17T18:00:28Z

commit ff88f8d48e99c57f52f22471765a1bd9ad2e00fc parent 44ac43e2f25e201fcc9f6ee771ffc4de2819ba7a Author: Anders Damsgaard Date: Thu, 17 Mar 2016 11:00:28 -0700 fix output files, add simple output visualization script

fix output folder creation, file write

2016-03-17T17:19:55Z

commit 44ac43e2f25e201fcc9f6ee771ffc4de2819ba7a parent 835f19fe0b2edc041905949cdd48466a743ed440 Author: Anders Damsgaard Date: Thu, 17 Mar 2016 10:19:55 -0700 fix output folder creation, file write

fix sprintf calls, improve error messages

2016-03-17T16:27:09Z

commit 835f19fe0b2edc041905949cdd48466a743ed440 parent 0f79de37df00ace7285e5b445d648a90a27d6def Author: Anders Damsgaard Date: Thu, 17 Mar 2016 09:27:09 -0700 fix sprintf calls, improve error messages mkdir is not successful

write slider positions to file, todo: add other params

2016-03-16T23:05:11Z

commit 0f79de37df00ace7285e5b445d648a90a27d6def parent bd4fc9c6e32224ee34ffce1e727317cc3b8375f5 Author: Anders Damsgaard Date: Wed, 16 Mar 2016 16:05:11 -0700 write slider positions to file, todo: add other params

show status during verbose runs, define bond stiffnesses, set temporal parameters

2016-03-16T22:39:54Z

commit bd4fc9c6e32224ee34ffce1e727317cc3b8375f5 parent 5d6e81a04a1e2fe6151185a4afeab15f67fc41b7 Author: Anders Damsgaard Date: Wed, 16 Mar 2016 15:39:54 -0700 show status during verbose runs, define bond stiffnesses, set temporal parameters

add command line arguments for help and version

2016-03-16T22:01:22Z

commit 5d6e81a04a1e2fe6151185a4afeab15f67fc41b7 parent f7efea53cfef992b109b9f461eecbd5d6fa0edac Author: Anders Damsgaard Date: Wed, 16 Mar 2016 15:01:22 -0700 add command line arguments for help and version

add slider interaction to main loop

2016-03-16T21:40:09Z

commit f7efea53cfef992b109b9f461eecbd5d6fa0edac parent 9a4d741751100153ad6ddfd98853e0a51c8d390f Author: Anders Damsgaard Date: Wed, 16 Mar 2016 14:40:09 -0700 add slider interaction to main loop

moved debug header file

2016-03-16T21:39:55Z

commit 9a4d741751100153ad6ddfd98853e0a51c8d390f parent 2cbbdd605da03594e01af13f38eb937c7ee4a0ac Author: Anders Damsgaard Date: Wed, 16 Mar 2016 14:39:55 -0700 moved debug header file