DIR Return Create A Forum - Home
---------------------------------------------------------
nCoV_info
HTML https://ncovinfo.createaforum.com
---------------------------------------------------------
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DIR Return to: genetics
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#Post#: 272--------------------------------------------------
B.1.1.7 (UK) and B.1.351(SA) and P1(Brazil) and B.1.617(India)
and BA (South Africa) and BA.2 (Denmark) ...
DIR By: gsgs
Date: January 4, 2021, 11:52 pm
---------------------------------------------------------
HTML http://sonorouschocolate.com/covid19/index.php/UK_variant_comparison
HTML https://filogeneti.ca/CoVizu/
variant charts by country :
HTML https://covariants.org/per-country
BA.2 in UK :
HTML http://sonorouschocolate.com/covid19/index.php?title=Omicron_BA.2_vs_BA.1
genbank :
HTML https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=SARS-CoV-2,%20taxid:2697049
HTML https://www.ncbi.nlm.nih.gov/datasets/coronavirus/genomes/
HTML https://www.ncbi.nlm.nih.gov/sars-cov-2/
HTML https://www.ncbi.nlm.nih.gov/sars-cov-2/download-nuccore-ids/
UK-cog :
HTML https://www.cogconsortium.uk/tools-analysis/public-data-analysis-2/
Germany :
HTML https://civnb.info/sequences/
HTML https://github.com/robert-koch-institut/SARS-CoV-2-Sequenzdaten_aus_Deutschland
HTML https://zenodo.org/record/5800442/files/robert-koch-institut/SARS-CoV-2-Sequenzdaten_aus_Deutschland-2021-12-23.zip?download=1
Denmark :
HTML https://www.covid19genomics.dk/statistics
(Jan15)
Brazil :
HTML https://github.com/CADDE-CENTRE/Novel-SARS-CoV-2-P1-Lineage-in-Brazil
sequences no longer available (? they claim it's there, but I
couldn't find it - edit: found ir here:),
HTML https://github.com/CADDE-CENTRE/Novel-SARS-CoV-2-P1-Lineage-in-Brazil/blob/main/virological_post/CADDE_B.1.1.28_P1.fas
here is a nice overview:
HTML https://cov-lineages.org/global_report_P.1.html
HTML https://cov-lineages.org/global_report_B.1.351.html
HTML https://cov-lineages.org/global_report_B.1.1.7.html
HTML https://cov-lineages.org/global_report_B.1.525.html
HTML https://cov-lineages.org/global_report_B.1.617.2.html
{old,
not updated}
2021/03/02 : wikipedia has a good table :
HTML https://en.wikipedia.org/wiki/Lineage_B.1.1.7
RKI :
HTML https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/Virologische_Basisdaten.html
genbank old :
HTML https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?VirusLineage_ss=Severe%20acute%20respiratory%20syndrome%20coronavirus%202,%20taxid:2697049&SeqType_s=Nucleotide
UK , old :
HTML https://www.cogconsortium.uk/data/
{no longer
available 2021/02/26)
checking for the new strains B.1.351 and B.1.1.7 = VUI202012/01
= VOC2020
prevalence in UK :
2020/12/24 :
HTML http://magictour.free.fr/b117a.GIF
2020/12/31 :
HTML http://magictour.free.fr/s2ua5spa.GIF
2011/01/09 :
HTML http://magictour.free.fr/s2ukc-sp.GIF
2020/12/08 , genbank=5/44708 , UK=1203(1050)/131631
2020/12/15 , DE=0/747 , UK=1289/133960
2020/12/17 , DE=0/764 , UK=141600 new strain-names
2020/12/20 , UK=2100/146416
DE,genbank,UK,RKI , 3rdcov(F157L,614D),B.1.351(South
Africa),B.1.1.7,all
2020/12/21 , 0,0,0,834 , 0,0,0,45416 , 03,01,3042,150173 ,
02,01,0958,3757
2020/12/22 , 0,0,0,834 , 0,0,0,45416 , 03,01,3063,150399 ,
00,00,0021,0226
2020/12/23 , 0,0,0,831 , 0,0,0,45416 , 03,01,3094,151499 ,
00,00,0031,1100 ,RKI:0/1742
2020/12/24 , 0,0,0,831 , 0,0,0,45660 , 06,01,3478,153115 ,
03,00,0384,1616
2020/12/25 , 0,0,0,831 , 0,0,?,45690 , 06,01,3786,154728 ,
00,00,0308,1613
2020/12/26 , 0,0,0,831 , 0,0,?,45690 , 07,01,4171,156089 ,
01,00,0385,1362
2020/12/27 , 0,0,0,831 , 0,0,?,45802 , 08,01,4599,157340 ,
01,00,0428,1251
2020/12/28 , 0,0,0,831 , 0,0,0,46123 , 08,01,4637,157550 ,
00,00,0038,0210
2020/12/29 , 0,0,0,831 , 0,0,0,46123 , 09,02,4722,157828 ,
01,01,0085,0278
2020/12/30 , 0,0,0,915 , 0,0,?,47112 , 09,02,4745,158072 ,
00,00,0023,0248
2020/12/31 , 0,0,0,914 , 0,0,2,47316 , 09,02,4745,158072 ,
00,00,0000,0000
2021/01/01 , ?,0,?,916 , 0,0,3,47364 , 12,06,5478,160174 ,
03,04,0733,2102
2021/01/02 , ?,0,?,916 , 0,0,?,47375 , 12,09,5579,160683 ,
00,03,0101,0509
2021/01/03 , ?,0,?,916 , 0,0,?,47375 , 12,10,5598,160953 ,
00,01,0019,0270
2021/01/04 , ?,0,?,916 , 0,0,?,47405 , 20,19,7145,164105 ,
08,09,0547,3152
2021/01/05 , ?,0,?,916 , 0,0,?.47405 , 20,19,7145,164105 ,
00,00,0000,0000
2021/01/06 , ?,0,?,916 , 0,0,?,47405 ,
7145,19,0,0,57678,667,3171,675,0,0
2021/01/07 , ?,0,?,916 , 0,0,?,47996 , 32,29,9425,170346 ,
12,10,2280,6241
2021/01/08 , ?,0,?,916 , 0,0,?,48034 , 32,29,9425,170346 ,
00,00,0000,0000
2021/01/09 , ?,0,?,916 , 0,?,?,48038 , 32,29,9425,170346 ,
00,00,0000,0000
2021/01/10 , ?,0,?,916 , 0,?,?,48063 , 32,29,9425,170346 ,
00,00,0000,0000
2021/01/11 , ?,0,?,916 , 0,0,12,48451 ,
13620,36,0,0,64210,703,3386,703,0,0
2021/01/12 , 0,0,3,960,48602,179932 ,
13620,36,0,0,64210,703,3386,703,0,0
2021/01/13 , 0,0,3,960,49010,179932,24(cadde,Brazil,B.1.1.28 )
2021/01/14,960,49124,179932,24
2021/01/15 , 0,1,5,1042 , 49807 . 179932 , 24
2021/01/16 , 1042,50006,179932,24
2021/01/17 , 1042,50008,179932,24 ,
2021/01/18 , 1042,50326,179932,24
2021/01/19 , 0,1,8,1126 , 50886 , 179932 , 24
2021/01/20 , 1129,51594,179932,24
2021/01/21 , 1129 , 52058 , 179932 , 24
2021/01/22 , 1129 , 52636 , 179932 , 24
2021/01/23 , 1129 , 52969 . 179932 , 24
2021/01/24 , 1210 , 52969 , 179932 , 24
2021/01/25 , 1272 , 53630 , 179932 , 24
2021/01/26 , 1272 , 54758 , 179932 , 24 (PHE:214159)
2021/01/27 , 1272 , 56592 , 179932 , 24 ,
2021/01/28 , 1274 , 57355 , 179932 , 24
2021/01/29 , 1274 , 57693 , 179932 , 24
2021/01/30 , 1274 , 57706 , 179932 , 24
2021/01/31 , 1274 , 57806 , 179932 , 24
2021/02/01 , 1356 , 57806 , 179932 , 24
2021/02/02 , 1397 , 59644 , 224820 , 24 {format-change at
cog-uk,}
2021/02/03 , 1397 , 60084 , 224820 , 24 ,
42108,132,0,36,73752,876,3723,764,1,0
2021/02/04 , 1397 , 60084*, 224820 , 24
2021/02/05 , 1397 , 61835 , 229120 , 24
2021/02/06 , 1397 , 61835 , 229120 , 24
2021/02/09 , 1397 , 62467 , 242926 , 24 , {
60543,170,129,0,81227,656,4136,839,1,26 }
2021/02/10 , 1397 , 62827 , 242926*, 24 ,
55405,156,0,36,76299,878,3780,772,1,0,10
2021/02/11 , 1397 , 63956 , 242926 , 24
2021/02/12 , 1397 , 65743 , 249523 , 24
2021/02/13 , 1397 , 65745 , 254045 , 24
2021/02/14 , 1397 , 66036 , 257782 , 24
2021/02/15 , 1397 , 66044 , 257782 , 24
2021/02/16 , 1397 ,
2021/02/17 , 1397 , 66781 , 267131 , 24 ,
75194,205,30,36,78074,880,3817,778,1,0
2021/02/18 , 1397 , 66785 , 271789 , 24 ,
79138,218,31,36,78354,888,3821,779,1,0
2021/02/19 , 1397 , 66785 , 271789 , 24
2021/02/20 , 1397 , 66785 , 271789 , 24
2021/02/21 , 1397 , 66785 , 271789 , 24
2021/02/22 , 1397 , 76163 , 271789 , 24 , big genbank
update, all from USA
2021/02/22 , 1397 , 79179 , 271789 , 24 ,
2021/02/25 , 1397 , 80086 , 271789 , 24
2021/03/01 , 1397 , 84277 , 297806 , 24 ,
101496,256,44,37,79650,885,3845,783,1,17
2021/03/06 , 1397 , 91705 , 313258 , 24 ,
113272,282,48,38,80487,890,3866,789,1,34,1
2021/03/10 , 1397 , 98768 , 313652 , 24 ,
116531,278,47,37,80204,880,3856,787,1,43,1
2021/03/12 , 1397, 103388 , 322717 , 24 ,
124917,295,47,37,80336,880,3859,787,1,54,1
2021/03/17 , 1397, 107850 , 332354 , 24 ,
133622,308,47,38,80494,880,3864,788,1,77,2 ; B.1.525 to 77
2021/04/22 , 1397 , 242752 , 387173 , 24 , suddenly there are
242752 sequences at genbank !
--------------------------------------
first B.1.1.7 at genbank : MW422255,MW422256,MW423686
San Diego, USA , Italy
Italy,12mut., no deletions !
HTML https://www.ncbi.nlm.nih.gov/nuccore/MW422255
-------------------------------------------
HTML https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?VirusLineage_ss=Severe%20acute%20respiratory%20syndrome%20coronavirus%202,%20taxid:2697049&SeqType_s=Nucleotide
HTML https://www.cogconsortium.uk/data/
HTML https://civnb.info/sequences/
---------------------------------------------------
weekly % of B.1.1.7 in Denmark week 46 - 04 : redoubles every 8
days
0.3,0.0,0.2,0.2,0.4,0.8,2.1,2.3,4.0,7.5,12.8,19.1
Germany, week 4, B.1.1.7 = 5.8%
--------------------------------------------------------
ONS, Jan05
ttps://www.ons.gov.uk/peoplepopulationandcommunity/healthandsocialcare/conditionsanddiseases/adhocs/12722estimatesofcovid19casesto02januaryforenglandregionsofenglandandbycasescompatiblewiththenewvariant
--------------------------------------------------------------------------
2021/02/01 Cologne reports 9% B.1.1.7 and 5% B.1.351
--- Code ---
2020/12/23 , 151499,03094,001,00,00,51701,628,3000,652,0,0
2020/12/30 , 158072,04745,002,00,00,55287,661,3122,663,0,0
2021/01/06 , 164104,07145,019,00,00,57678,667,3171,675,0,0
2021/01/11 , 179931,13620,036,00,00,64210,703,3386,703,0,0
2021/02/03 , 224820,42108,132,00,36,73752,876,3723,764,1,0
2021/02/10 , 242925,55405,156,00,36,76299,878,3780,772,1,0
2021/02/17 , 267131,75194,205,30,36,78074,880,3817,778,1,0
------------------------------------------------------------------------------------
A , B, C, D, E, F, G, H, I,
J, , L,M
all,
A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A.23,Uganda
D , B.1.1.28,Brazil-Manaos
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258 , Ireland ?
H , B.1.221 , Belgium
I , B.1.375 , USA - S-drop-out
J , B.1.525 ,
--- End Code ---
#Post#: 273--------------------------------------------------
Re: B.1.1.7 and B.1.351 (and ...)
DIR By: gsgs
Date: January 6, 2021, 12:26 am
---------------------------------------------------------
400 Austria , 4*B117 , 1*B351
196 US-LA Nov25-Dec18. 0*B117
Denmark ,86*B117
India,76
Ireland, weeks 51,52,53 : 09%,13%,25%
Luxembourg: 2% (3/141) Dec20-Dec29
Belgium, Jan25, 25% are B117
2020-01-06,Cape Town – The Western Cape government said its
Garden Route district has passed
its Covid-19 peak and the rate of infections was significantly
decreasing in the area.
----------------------------------------------
#Post#: 274--------------------------------------------------
Re: B.1.1.7 and B.1.351 (and ...)
DIR By: gsgs
Date: January 8, 2021, 10:09 am
---------------------------------------------------------
--- Code ---
D00614G,135340,143930,8590
A00222V, 56710, 60647,3937
N00501Y, 6060, 9928,3868
P00681H, 5659, 9517,3858
T00716I, 5624, 9471,3847
D01118H, 5576, 9422,3846
S00982A, 5568, 9413,3845
A00570D, 5569, 9413,3844
L00018F, 31126, 33762,2636
A00262S, 2873, 3053, 180
E00583D, 1929, 2091, 162
N00439K, 3669, 3794, 125
L00005F, 2270, 2394, 124
P00272L, 1896, 2008, 112
S00477N, 2928, 3034, 106
D00080Y, 1134, 1227, 93
Q00023H, 591, 660, 69
G00181V, 248, 317, 69
N00164T, 648, 708, 60
S00256L, 743, 800, 57
A00706V, 141, 196, 55
S00098F, 809, 859, 50
D00215H, 883, 930, 47
A01020S, 227, 269, 42
Q00613H, 210, 252, 42
S00494P, 101, 143, 42
L00176F, 886, 924, 38
D01163Y, 1730, 1766, 36
P01069S, 173, 209, 36
G01167V, 1704, 1738, 34
A00688V, 833, 863, 30
A00701V, 81, 111, 30
S00939F, 246, 274, 28
H00655Y, 1078, 1104, 26
Q00675H, 215, 240, 25
N00185S, 101, 126, 25
P00026S, 307, 331, 24
S00254F, 124, 147, 23
D00138Y, 76, 98, 22
H00049Y, 93, 114, 21
E00484K, 23, 44, 21
Q00677H, 198, 218, 20
D00080A, 24, 44, 20
P00681R, 21, 41, 20
A00831V, 18, 38, 20
K00417N, 13, 33, 20
-------------------------------
spike amino-acid mutations at cog-uk
A:mutation
B:occurrances Jan03
C:occurrances Jan07
D:occurrances between Jan03 and Jan07
--- End Code ---
#Post#: 281--------------------------------------------------
Re: B.1.1.7 (UK) and B.1.351(SA) and P1(Manaos) and 22033 ...)
DIR By: gsgs
Date: January 13, 2021, 9:03 pm
---------------------------------------------------------
Germany updates :
2020/10/18 , 496 ,
HTML http://magictour.free.fr/sars2de4.GIF
2020/10/28 , 546 ,
HTML http://magictour.free.fr/sars2de5.GIF
2020/11/01 , 576 ,
HTML http://magictour.free.fr/sars2de6.GIF
2020/11/04 , 619 ,
HTML http://magictour.free.fr/sars2de7.GIF
2020/11/24 , 658 ,
HTML http://magictour.free.fr/sars2de8.GIF
2020/12/08 , 713 ,
HTML http://magictour.free.fr/sars2dea.GIF
2020/12/15 , 747 ,
HTML http://magictour.free.fr/sars2deb.GIF
2020/12/21 , 835 ,
HTML http://magictour.free.fr/sars2ded.GIF
2020/12/30 , 917 ,
HTML http://magictour.free.fr/sars2dee.GIF
2021/01/13 , 960 ,
HTML http://magictour.free.fr/sars2def.GIF
2021/01/16 , 1042 ,
HTML http://magictour.free.fr/sars2deg.GIF
2021/01/20 , 1126 ,
HTML http://magictour.free.fr/sars2deh.GIF
2021/01/25 , 1210 ,
HTML http://magictour.free.fr/sars2dei.GIF
2021/01/26 , 1272 ,
HTML http://magictour.free.fr/sars2dej.GIF
2021/02/02 , 1356 ,
HTML http://magictour.free.fr/sars2dek.GIF
2021/02/03 , 1397 ,
HTML http://magictour.free.fr/sars2del.GIF
--- Code ---
=============Germany===============
00,0,0,0,013,0, 4 , 0, 505,4,2010-10-18
00,0,0,0,030,0,12 , 2, 572,6,2020-11-01
00,0,0,0,076,0,32 ,11, 710,a,2020-12-07
00,0,0,0,084,0,35 ,11, 745,b,2020-12-15
00,0,0,0,092,0,37 ,15, 764,c,2020-12-18
00,0,0,0,117,0,57 ,16, 835,d,2020-12-21
00,0,0,0,137,0,62 ,16, 915,e,2020-12-30
03,0,0,0,145,1,65 ,22, 992,f,2021-01-13
05,1,0,0,188,2,71 ,26,1042,g,2021-01-16
08,1,0,0,247,2,75 ,29,1127,h,2021-01-20
14,4,0,0,288,2,79 ,38,1210,i,2021-01-25
49,4,0,0,308,2,82 ,39,1273,j,2021-01-25
59,5,0,0,352,2,97 ,46,1356,k,2021-02-01
66,5,0,0,372,2,101,50,1397,l,2021-02-03
--------------------------------------
A,B,C,D, E,F, G , H, I,J, K
A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A-old,Uganda
D , B.1.1.28,Brazil-Manaos
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258 , Ireland ?
H , B.1.221 , Belgium
I , -,all,World
J , filename
K , date
--- End Code ---
--- Code ---
==================UK==================
0, 0, 0,0, 0, 0, 0, 5, 42102,2020-10-18
66, 0, 0,0,26660,230,2021,520,107132,2010-11-23
963, 0, 0,0,43679,353,2697,647,131386,2020-12-07
09418,029,26,0,60484,560,3326,688,151280,2021-01-08
42130,132,94,0,74966,619,3818,779,201894,2021-02-03
---------------------------------------------------
A, B, C,D, E, F, G, H, I, J
A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A-old,Uganda
D , B.1.1.28,Brazil-Manaos
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258 , Ireland ?
H , B.1.221 , Belgium
I , -,all,World
J , date
--- End Code ---
#Post#: 288--------------------------------------------------
Re: B.1.1.7 (UK) and B.1.351(SA) and P1(Manaos) and 22033 ...)
DIR By: gsgs
Date: February 20, 2021, 3:46 am
---------------------------------------------------------
Feb20 , % sequences with N501Y:
UK:53,DK:22,US:08,CH:20,NL:27,F:53,E:26,B:35,ICE:15,LUX:20,
I:69,IRE:79,DE:13,POR:33,SW:42,AUT:27,N:26,SA:37,
LIT:00,AUS:60,ISR:27,FIN:38,CZ:25,CDN:56,
TUR:03,POL:11,HUN:99,IND:33,BRA:00:,SLK:79
EGY:03,NIG:68,MAC:00,SGP:18,GHA:46,ARU:49
HTML https://covariants.org/per-country
#Post#: 289--------------------------------------------------
Re: B.1.1.7 (UK) and B.1.351(SA) and P1(Manaos) and 22033 ...)
DIR By: gsgs
Date: March 25, 2021, 2:41 am
---------------------------------------------------------
--- Code ---
>B.1.1.7
,28,C00241T,C00913T,C03037T,C03267T,C05388A,C05986T,T06954C,C14408T,C14676T,C15279T,T16176C,A23063T,C23271A,A23403G,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,G28881A,G28882A,G28883C,C28977T
>B.1.351
,19,C00241T,C01059T,A02692T,C03037T,G05230T,A10323G,C14408T,A21801C,A22206G,G22813T,G23012A,A23063T,A23403G,C23664T,G25563T,C25904T,C26456T,C28253T,C28887T
>A.23
,22,A00901T,C04573T,C08782T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,G21985T,C22000T,C22033A,G22661T,G23401T,C23604G,T24097C,C25708T,G28079T,T28144C,G28167A,G28378C,G28878A
>B.1.1.28,25,C00241T,T00733C,C03037T,A05648C,A06319G,A06613G,C14408T,G17259T,C21614T,C21621A,C21638T,G21974T,A22812C,G23012A,A23403G,C24642T,G25088T,T26149C,G28167A,C28512G,A28877T,G28878C,G28881A,G28882A,G28883C
>B.1.177
,13,C00241T,T00445C,C03037T,C06286T,C14408T,G21255C,C21614T,C22227T,A23403G,C26801G,C27944T,C28932T,G29645T
>B.1.1.70,25,C00214T,C03037T,C03096T,G04255A,C07334T,G10265A,C10449T,A12103G,C14408T,A15972G,C19374T,C19718T,C20270T,G20433A,A23063T,A23403G,A25859G,T26504C,C26858T,C27434T,G28300C,T28759C,G28881A,G28882A,G28883C
>B.1.258 , 6,T07767C,C08047T,C17104T,A20268G,C22879A,G29734C
>B.1.221
,13,C00241T,C03037T,C03602T,C06941T,C14408T,C15324T,C21855T,A23403G,A25505G,G25906C,G25996T,C28651T,C28869T
>B.1.375
,14,C00241T,C03037T,A23403G,C14408T,C01059T,T01171C,A05747G,C10789T,G17259T,G24007A,G25563T,C25844T,A26664G,C28887T
>B.1.525
,18,C01498T,A01807G,T08593C,C09565T,9-11288,C14407T,C18171T,A20724G,A21717G,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,3-28278,A28699G,G29543T
>B.1.526
,15,C00241T,C01059T,C03037T,T09867C,9-11288,C14408T,A16500C,C21575T,C21846T,A22320G,A23403G,C25517T,G25563T,C28869T,G28975A
>P.1
,31,G28883C,G28882A,G28881A,G21974T,C14408T,C03037T,A23403G,C21614T,T26149C,T00733C,G28878C,G28167A,G25088T,G23012A,G22132T,G17259T,C28512G,C24642T,C23525T,C21638T,C21621A,C13860T,C12778T,C02749T,A28877T,A23063T,A22812C,A06613G,A06319G,A05648C,C03828T
--- End Code ---
--- Code ---
===================UK=================================
0, 0, 0, 0, 0, 0, 0, 5, , , , , ,
42102,2020-10-18
66, 0, 0, 0,26660,230,2021,520, , , , ,
,107132,2010-11-23
963, 0, 0, 0,43679,353,2697,647, , , , ,
,131386,2020-12-07
3092, 1, 3, 0,49129,465,2912,650, , , , ,
,133277,2020-12-22
5575, 1, 11, 0,56531,539,3088,668, , , , ,
,142672,2021-01-03
9418, 29, 26, 0,60484,560,3326,688, , , , ,
,151280,2021-01-08
42130,132, 94, 0,74966,619,3818,779,1, , , ,
,201894,2021-02-03
60543,170,129, 0,81227,656,4136,839,1, 28, , ,
,242925,2021-02-09
101496,256, 44,37,79650,885,3845,703,1, 17,0,
5,42,297806,2021-02-28-
139044,324,167,10,80844,625,3904,796,1,149,3,15,53,306229,2021-03-18
162568,380,167,51,80322,770,3891,804,1,240,8,27,55,329268,2021-03-24
--------------------------------------------------------------------
A, B, C, D, E, F, G, H,I, J,K, L, M, N,
O
A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A.23,Uganda
D , B.1.1.28,Brazil-Manaos 1176
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258 , Ireland ?
H , B.1.221 , Belgium
I , B.1.375 , USA - S-drop-out 477
J , B.1.525 , 52,67,484,677,888
K , B.1.526 , 5,95,253,701
L , P.1 , 18,20,26,138,190,417,484,N501,655,1176,1027
M , P.2 , 484,859,1176
N , -,all,World
O , date
--- End Code ---
--- Code ---
=============Germany===============
00,0,0,0,013,0, 4 , 0, 505,4,2010-10-18
00,0,0,0,030,0,12 , 2, 572,6,2020-11-01
00,0,0,0,076,0,32 ,11, 710,a,2020-12-07
00,0,0,0,084,0,35 ,11, 745,b,2020-12-15
00,0,0,0,092,0,37 ,15, 764,c,2020-12-18
00,0,0,0,117,0,57 ,16, 835,d,2020-12-21
00,0,0,0,137,0,62 ,16, 915,e,2020-12-30
03,0,0,0,145,1,65 ,22, 992,f,2021-01-13
05,1,0,0,188,2,71 ,26,1042,g,2021-01-16
08,1,0,0,247,2,75 ,29,1127,h,2021-01-20
14,4,0,0,288,2,79 ,38,1210,i,2021-01-25
49,4,0,0,308,2,82 ,39,1273,j,2021-01-25
59,5,0,0,352,2,97 ,46,1356,k,2021-02-01
66,5,0,0,372,2,101,50,1397,l,2021-02-03
--------------------------------------
A,B,C,D, E,F, G , H, I,J, K
A , B.1.1.7,SE-England
B , B.1.351,South Africa
C , A.23,Uganda
D , B.1.1.28,Brazil-Manaos
E , B.1.177,Spain-Aragon
F , B.1.1.70,Wales
G , B.1.258 , Ireland ?
H , B.1.221 , Belgium
I , -,all,World
J , filename
K , date
--- End Code ---
#Post#: 290--------------------------------------------------
Re: B.1.1.7 (UK) and B.1.351(SA) and P1(Manaos) and 22033 ...)
DIR By: gsgs
Date: March 28, 2021, 10:43 pm
---------------------------------------------------------
--- Code ---
date, all, 1.7, 351,A23,1.28, 177,1.70,
258,221,375,525,526, P1,P2,E484K
--------------------------------------------------------------------------------------------------
0202,224821, 42108, 132, 0, 36,73752, 876,3723,764, 1, 0,
0, 0,21,238
0214,257783, 67110, 197, 20, 36,77610, 880,3805,777, 1, 0,
0, 0,33,384
0228,297806,101496, 256, 44, 37,79650, 885,3845,783, 1, 17,
0, 5,42,532
0312,322718,124919, 295, 47, 37,80336, 880,3859,787, 1, 54,
1, 14,51,661
0327,358209,157497, 363, 51, 41,80721, 882,3881,791, 1,174,
6, 33,56,985
-----------------------------------------------------------------------------------------------------------
date, all, 1.7, 351,A23,1.28, 177,1.70,
258,221,375,525,526, P1,P2,E484K
--- End Code ---
===============================================================
weeks 61,...,69 , from cog_0427.lw1
--- Code ---
B.1.351 , 29,38,38,63,90,68,71,54,09
B.1.617 , 02,05,14,18,21,50,91,198,42
B.1.525 , 43,56,45,48,27,26,13,18,03
B.1.1.318, 08,24,18,11,27,14,13,04,01
A , 13,10,08,19,43,14,18,09,03
C.36 , 03,15,16,11,09,11,14,24,03
P.1 , 04,06,10,08,02,11,11,17,05
B.1.36.31, 02,08,25,14,05,04,01,00,00
B.1.177. ,105,46,27,13,12,04,00,01,00
B.1.177 ,162,84,69,28,28,04,11,05,00
B.1.36. , 07,04,15,07,02,01,01,08,00
B.1.36 , 06,11,11,07,02,01,00,00,00
B.1.1. , 19,24,23,04,13,03,08,06,01
B.1. , 37,35,48,22,19,16,13,16,05
B.1.1.7,15991,13973,16496,16091,17073,12456,7619,6553,742
--- End Code ---
#Post#: 302--------------------------------------------------
Re: B.1.1.7 (UK) and B.1.351(SA) and P1(Brazil) and
B.1.617(India) and ...
DIR By: gsgs
Date: June 15, 2021, 10:54 pm
---------------------------------------------------------
weekly promille of B.1.617 in cog-UK-sequences by lab per
2021-06-15
--- Code ---
oth-,000,003,011,033,046,089,270,432,611,795,837,000
HSLL,000,000,068,232,212,392,470,664,807,893,919,000
RAND,000,032,048,136,228,229,000,160,000,000,000,000
PHEC,000,015,061,083,217,291,380,379,691,795,878,000
MILK,001,004,026,086,160,273,416,602,766,892,899,000
ALDP,000,002,016,049,141,306,507,750,857,929,919,000
CAMC,021,041,081,046,000,000,000,000,000,000,000,000
NORT,000,049,008,020,030,023,089,222,455,650,710,000
LOND,000,000,000,103,117,299,547,672,746,892,895,000
QEUH,000,002,005,009,024,379,706,782,840,906,897,000
CAMB,000,000,041,393,136,331,360,440,968,000,914,000
all-,001,007,022,057,113,227,374,564,752,866,883,000
weekly numbers of all sequences by nation :
all-,2868,8746,7965,7998,7528,7055,7930,9994,13063,19521,4140
SCT,2060,1263,1204,1053,0990,1048,1356,1698,2531,3272,0005
WLS,0364,0351,0262,0205,0190,0162,0181,0175,0139,0272,0212
WLS,0142,0111,0091,0084,0014,0038,0099,0359,0206,0009,0000
weekly promille of B.1.617 by nation :
all,001,007,022,057,113,227,374,564,752,866,883
SCT,000,003,007,027,048,088,313,539,644,755,980
WLS,000,003,004,034,026,111,210,126,503,680,802
WLS,000,000,011,107,142,026,020,053,082,879,000
--- End Code ---
#Post#: 307--------------------------------------------------
Re: B.1.1.7 (UK) and B.1.351(SA) and P1(Brazil) and
B.1.617(India) and ...
DIR By: gsgs
Date: November 7, 2021, 12:00 pm
---------------------------------------------------------
delta with N501Y in Germany
HTML https://outbreak.info/situation-reports?muts=S%3AN501Y
As of 4 November 2021 07:26 AM, 1,266,536
HTML https://outbreak.info/situation-reports?muts=S%3AN501Y&selected=DEU&loc=DEU
HTML https://outbreak.info/location-reports?loc=DEU
Theo Sanderson replied
Future
@UseBy2022
·
Nov 5
Message from @Unusual_Times
AY.39 is driving growth in Belgium and the Netherlands
But in Germany you have a potentially HUGE problem with the
convergent evolution
of B.1.617.2 carrying the N501Y mutation - as yet unclassified
in GISAID/PANGO.
RamalamaKlingelingelingDingdong
@shisha_de 2021-11-07
Die Deutschen haben sich wohl eine eigene Variante gezüchtet:
B.1.617.2 mit N501Y
Mutation, die sonst nur in B1351 und P1 vorkommt. Anteil nun 6%
und schnell steigend.
---------------------------------
HTML https://twitter.com/SimonReiss3/status/1457149720514732036
---------------------------------------------
#Post#: 309--------------------------------------------------
Re: B.1.1.7 (UK) and B.1.351(SA) and P1(Brazil) and
B.1.617(India) and ...
DIR By: gsgs
Date: November 13, 2021, 11:23 pm
---------------------------------------------------------
weekly AY.4.2 at cog_UK , weeks 76-98
AY.4.2 weeks 76-98
16, 11, 82, 132, 155,
188, 323, 389, 429, 603, 892,1395,1615,1823,2306,
2799,3178,3797,3844,4725,5377,5340, 51,
-----------------------------------
Using the surveillance case definition. sequences are identified
from Germany (493),
Denmark (413), Poland (203), United States (128), Italy (117),
Ireland (96), Belgium (95),
Romania (79), France (68), Spain (55), Switzerland (53),
Netherlands (49), India (24),
Norway (24), Bulgaria (16), Slovakia (14), Canada (13), Czechia
(11), Portugal (10),
Lithuania (10) and 21 other countries with fewer than 10
sequences.
------------------------------------------
*****************************************************
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