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       #Post#: 267--------------------------------------------------
       spike-mutations
       By: gsgs Date: December 22, 2020, 11:42 am
       ---------------------------------------------------------
       [code]
       29,  26,   1,C21575T,   L5F,
       937, 435,  36,C21614T,  L18F,20A.EU1=B.1.177
       9,  10,   0,C21627T,  T22I,
       31,  11,   0,A21631T,  Q23H,
       41,  17,   7,C21637T,      ,
       6,   7,   0,C21638T,  P26S,
       2,   6,   0,C21727T,      ,
       30,   6,   5,G21800T,  D80Y,
       9,  10,   0,C21855T,  S98F,
       0,   6,   0,C22000T,      ,
       2,   6,   0,T22016A, W152R,
       81,   6,   0,G22051T,      ,
       15,   6,   8,A22053C, N164T,
       7,   8,   3,C22075T,      ,
       18,   7,   0,C22088T, L176F,
       7,   9,   3,G22131T, R190M,
       15,  19,   0,G22205C, D215H,
       16,  11,   0,C22224T, S221L,
       1584, 908,  73,C22227T, A222V,20A.EU1=B.1.177
       13,  10,   0,C22329T, S256L,
       58,  52,   3,G22346T, A262S,        B.1.177
       39,  39,   0,C22377T, P272L,
       20,  13,   1,C22388T,      ,
       0,  19,   0,C22432T,      ,
       63,  47,   2,C22444T,      ,         B.1.36
       1,   8,   0,C22530T, T323I,
       1,   7,   1,A22546G,      ,
       36,  33,   3,C22879A, N439K,          B.1.5
       2,  13,   1,G22918T,      ,
       43,  16,   0,G22992A, S477N,
       6,  10,   0,T23042C, S494P,
       423, 880,  12,A23063T, N501Y,        B.1.1.7
       406, 885,  14,C23271A, A570D,        B.1.1.7
       42,  25,   4,G23311C, E583D,
       6,  19,   3,T23323C,      ,
       9,   6,   0,G23401T, Q613H,
       2344,2015, 104,A23403G, D614G,
       409, 889,  14,C23604A, P681H,        B.1.1.7
       1,   6,   0,G23608T,      ,
       12,  10,   0,C23625T, A688V,
       28,  24,   0,C23644T,      ,
       11,  11,   0,C23679T, A706V,
       407, 883,  14,C23709T, T716I,        B.1.1.7
       0,   6,   0,T23866C,      ,
       5,  14,   1,G23873T, A771S,
       21,  10,   0,T24088C,      ,
       19,  35,   1,C24106T,      ,
       1,   6,   0,C24130T,      ,
       1,   6,   0,C24138A, T859N,
       4,   9,   0,C24138T, T859I,
       347, 235,  16,C24334T,      ,
       7,  15,   0,C24378T, S939F,
       32,   9,   0,C24382T,      ,
       406, 885,  14,T24506G, S982A,        B.1.1.7
       11,   8,   0,G24620T,A1020S,
       14,  10,   0,T24769C,      ,
       3,   8,   0,G24781T,K1073N,
       30,  19,   1,T24910C,      ,
       406, 887,  14,G24914C,D1118H,        B.1.1.7
       1,   8,   1,T24979C,      ,
       4,   6,   0,C25000T,      ,
       2,   7,   0,G25049K,      ,
       45,  71,   0,G25049T,D1163Y,        B.1.177
       46,  76,   0,G25062T,G1167V,        B.1.177
       12,  14,   0,C25096T,      ,
       4,  14,   1,C25349A,P1263T,
       -----------------------------------------------------
       2345,2027,0104,total genomes
       0049,0050,0051,week
       [/code]
       frequency of spike-mutations in 133277 full genomes
       in week 50 from cogconsortium , 2020/12/22
       831,45416,151499
       checking for the new strain B.1.1.7 = VUI202012/01 = VOC2020
       prevalence in UK :
  HTML http://magictour.free.fr/b117a.GIF
       2020/12/08 , genbank=5/44708 , UK=1203(1050)/131631
       2020/12/15 , DE=0/747 , UK=1289/133960
       2020/12/17 , DE=0/764 , UK=141600 new strain-names
       2020/12/20 , UK=2100/146416
       2020/12/21 , DE=0/834,UK=3042/150173
       2020/12/22 , DE=834,genbank=,UK=3063/150399
       2020/12/23 , DE=0/831,genbank=45416,UK=3094/151499,RKI:0/1742
       I downloaded the 133277 aligned sequences from cogconsortium
       (3.9GB)
       and processed/converted them into a better format :
  HTML http://magictour.free.fr/sars2uk8.7z
       (2MB)
       this takes many hours each day for me , because of the big
       files.
       Is someone else doing this ?
       Can we coordinate, exchange the processed/improved data ?
       -------------------------------------------
       viruses with many spike-amino-acid mutations :
       genbank, USA,CA : S13I,C136G,W152C,L452R
       UK, B.1.1.7 , B.1.258 , B.1.37 , B.1.315 , B.1.177 ,  B.1.160 ,
       B.1.5 ,  B.1.351 (SA)
       file spisur.12a :  sequences with >=5?
       spike-amino-acid-mutations (2020/12/28)
       [code]
       182,B.1.177.9
       55,B.1.177
       31,B.1.258.4
       25,B.1.1.37
       14,B.1.177.6
       11,B.1.177.17
       4,B.1.1
       3,B.1.160.7
       1,B.1.5.34
       1,B.1.351
       1,B.1.1.194
       [/code]
       [code]
       329,D614G
       286,A222V
       222,A262S
       184,D80Y
       183,N164T
       127,E583D
       57,L5F
       46,L18F
       40,P272L
       32,G1219V
       31,V772I
       31,N439K
       31,L189F
       28,H655Y
       27,T95I
       25,D574Y
       18,V308L
       15,Q23H
       15,A1020S
       12,I1216V
       11,L176F
       8,N536S
       8,G446V
       8,D796H
       8,A520S
       7,G1167V
       7,D1163Y
       6,Q613H
       6,D215H
       5,S98F
       5,S477N
       5,R346K
       4,K1205N
       4,A1226V
       3,W152R
       3,T678I
       3,S884F
       3,S221L
       3,R21K
       3,P681L
       3,L244F
       3,G482S
       3,F329L
       3,A871S
       2,T716I
       2,S982A
       2,R190K
       2,Q677H
       2,Q675R
       2,Q218H
       2,P681H
       2,P384L
       2,N501Y
       2,L552F
       2,L1141F
       2,K1191N
       2,H146Y
       2,E484K
       2,E1150D
       2,D936Y
       2,D215Y
       2,D215V
       2,D138Y
       2,D1118H
       2,A845S
       2,A783T
       2,A771S
       2,A706V
       2,A688V
       2,A570D
       2,A522V
       2,A522S
       2,A1174V
       2,A1078S
       1,Y269C
       1,Y266C
       1,Y200C
       1,Y145N
       1,V687L
       1,V539I
       1,V445I
       1,V36L
       1,V367F
       1,V213A
       1,V1230A
       1,V1104L
       1,T768N
       1,T63N
       1,T51I
       1,T307N
       1,T22I
       1,T20I
       1,T19K
       1,S937L
       1,S813I
       1,S735A
       1,S691F
       1,S659L
       1,S50L
       1,S494P
       1,S151T
       1,S12F
       1,S1261F
       1,S1242I
       1,S1175P
       1,R765L
       1,R214L
       1,Q314K
       1,P9L
       1,P681R
       1,P561T
       1,P384S
       1,P1079S
       1,N925S
       1,N556Y
       1,N211T
       1,L822F
       1,L455F
       1,L216F
       1,L141F
       1,K444R
       1,K417N
       1,K1181I
       1,K1073N
       1,I468V
       1,I210T
       1,I1179V
       1,H146Q
       1,G482A
       1,G476F
       1,G181V
       1,G181A
       1,G142V
       1,G1124V
       1,F2L
       1,F157S
       1,F157L
       1,E484R
       1,E1182Q
       1,D80A
       1,D215G
       1,D1257Y
       1,D1153Y
       1,D1084Y
       1,A924V
       1,A924S
       1,A879V
       1,A846V
       1,A701V
       1,A668S
       1,A653V
       1,A647S
       1,A27S
       1,A243S
       1,A163V
       [/code]
       #Post#: 275--------------------------------------------------
       Re: spike-mutations
       By: gsgs Date: January 8, 2021, 10:11 am
       ---------------------------------------------------------
       [code]
       D00614G,135340,143930,8590
       A00222V, 56710, 60647,3937
       N00501Y,  6060,  9928,3868
       P00681H,  5659,  9517,3858
       T00716I,  5624,  9471,3847
       D01118H,  5576,  9422,3846
       S00982A,  5568,  9413,3845
       A00570D,  5569,  9413,3844
       L00018F, 31126, 33762,2636
       A00262S,  2873,  3053, 180
       E00583D,  1929,  2091, 162
       N00439K,  3669,  3794, 125
       L00005F,  2270,  2394, 124
       P00272L,  1896,  2008, 112
       S00477N,  2928,  3034, 106
       D00080Y,  1134,  1227,  93
       Q00023H,   591,   660,  69
       G00181V,   248,   317,  69
       N00164T,   648,   708,  60
       S00256L,   743,   800,  57
       A00706V,   141,   196,  55
       S00098F,   809,   859,  50
       D00215H,   883,   930,  47
       A01020S,   227,   269,  42
       Q00613H,   210,   252,  42
       S00494P,   101,   143,  42
       L00176F,   886,   924,  38
       D01163Y,  1730,  1766,  36
       P01069S,   173,   209,  36
       G01167V,  1704,  1738,  34
       A00688V,   833,   863,  30
       A00701V,    81,   111,  30
       S00939F,   246,   274,  28
       H00655Y,  1078,  1104,  26
       Q00675H,   215,   240,  25
       N00185S,   101,   126,  25
       P00026S,   307,   331,  24
       S00254F,   124,   147,  23
       D00138Y,    76,    98,  22
       H00049Y,    93,   114,  21
       E00484K,    23,    44,  21
       Q00677H,   198,   218,  20
       D00080A,    24,    44,  20
       P00681R,    21,    41,  20
       A00831V,    18,    38,  20
       K00417N,    13,    33,  20
       -------------------------------
       spike amino-acid mutations at cog-uk
       A:mutation
       B:occurrances Jan03
       C:occurrances Jan07
       D:occurrances between Jan03 and Jan07
       [/code]
       [code]
       B.1.351        9,   29,  20
       B.1.1.7     5579, 9432,3853
       B.1.177    42296,46609,4313
       B.1.1.7     5579, 9432,3853
       B.1.177.7   2313, 2768, 455
       B.1.177.4   3488, 3795, 307
       B.1         5562, 5833, 271
       B.1.1.37    4374, 4590, 216
       B.1.177.15  1226, 1422, 196
       B.1.1.315   4081, 4257, 176
       B.39         183,  343, 160
       B.1.1      11496,11650, 154
       B.1.177.16   898, 1032, 134
       B.1.160     1924, 2048, 124
       B.1.1.311   2469, 2584, 115
       B.1.36.17   1915, 2010,  95
       B.1.36       652,  744,  92
       B.1.177.6    604,  695,  91
       B.1.177.9    647,  732,  85
       B.1.160.7    596,  681,  85
       B.1.177.18   459,  544,  85
       B.1.1.1     5470, 5553,  83
       B.1.1.307   2015, 2098,  83
       B.1.177.5    479,  545,  66
       B.1.1.301    700,  763,  63
       B.1.1.71      23,   86,  63
       B.1.258.7    418,  477,  59
       B.1.177.10   348,  405,  57
       B.1.160.1     96,  152,  56
       B.1.1.70     666,  721,  55
       B.1.258.11     2,   57,  55
       B.1.1.279   1041, 1095,  54
       B.1.177.20   453,  507,  54
       B.1.1.300     36,   90,  54
       B.1.177.17   827,  878,  51
       B.1.221      667,  712,  45
       B.1.177.22    76,  120,  44
       B.1.258.10    41,   85,  44
       B.1.160.6    129,  169,  40
       B.1.36.6      99,  136,  37
       B.1.1.125     60,   96,  36
       B.1.177.8    870,  903,  33
       B.1.247      118,  151,  33
       B.1.258     1787, 1819,  32
       B.1.258.3    406,  437,  31
       B.1.222      170,  200,  30
       B.1.1.130     78,  108,  30
       B.1.177.19   445,  474,  29
       B.1.1.10     469,  497,  28
       B.1.1.49      33,   61,  28
       B.1.1.238      0,   28,  28
       B.1.254       26,   52,  26
       A             66,   91,  25
       B.1.177.2    182,  204,  22
       B.1.1.286    323,  344,  21
       B.1.1.196    153,  173,  20
       B.1.104       96,  116,  20
       B.1.351        9,   29,  20
       B.1.1.240    176,  194,  18
       B.1.177.26   129,  147,  18
       B.1.246       21,   39,  18
       B.1.1.282     11,   29,  18
       B.1.1.5        6,   24,  18
       B.1.1.101      0,   16,  16
       B.1.235      859,  874,  15
       B.1.1.105      4,   19,  15
       B.1.1.236     90,  104,  14
       B.1.177.11   564,  577,  13
       B.1.141       59,   72,  13
       B.26          29,   42,  13
       B.1.1.197      7,   20,  13
       B.1.1.303    350,  362,  12
       B.48         147,  159,  12
       B.1.258.4    205,  216,  11
       B.1.36.9     203,  214,  11
       B.1.1.204     68,   79,  11
       B.54          65,   76,  11
       B.52          59,   70,  11
       B.47           5,   16,  11
       B.1.362      204,  214,  10
       B.1.1.234     47,   57,  10
       B.32          25,   35,  10
       B.1.36.1      25,   35,  10
       B.1.1.316      8,   18,  10
       B.3          508,  517,   9
       B.18          11,   20,   9
       B.1.1.304    139,  147,   8
       B.1.1.264    136,  144,   8
       B.1.131       28,   36,   8
       B.1.1.190     10,   18,   8
       B.1.1.285      0,    8,   8
       B.1.258.12   101,  108,   7
       B.1.1.43      49,   56,   7
       B.1.1.292     46,   53,   7
       B.1.1.46      10,   17,   7
       B.1.5.34       6,   13,   7
       B.1.111        3,   10,   7
       B.1.1.198    418,  424,   6
       B.1.1.44     340,  346,   6
       B.1.160.2    121,  127,   6
       B.1.1.232     88,   94,   6
       B.1.1.170     65,   71,   6
       B.1.353        1,    7,   6
       B.1.1.4      473,  478,   5
       B.1.98       461,  466,   5
       B.1.367      268,  273,   5
       B.1.1.217    251,  256,   5
       B.1.177.13   106,  111,   5
       B.1.1.12      77,   82,   5
       B.1.1.50      53,   58,   5
       B.1.240       49,   54,   5
       B.1.1.159     42,   47,   5
       B.1.1.153     30,   35,   5
       B.1.248       28,   33,   5
       B.1.2         25,   30,   5
       B.1.1.248     25,   30,   5
       B.1.1.106      9,   14,   5
       B.1.1.103      5,   10,   5
       B.1.35       217,  221,   4
       B.1.160.4    179,  183,   4
       B.1.146      159,  163,   4
       B.10         118,  122,   4
       B.1.1.189     76,   80,   4
       B.1.1.274     69,   73,   4
       B.1.201       64,   68,   4
       B.1.36.16     62,   66,   4
       B.1.258.6     46,   50,   4
       B.1.229       29,   33,   4
       B.1.1.20      11,   15,   4
       B.1.36.3       0,    4,   4
       B.1.1.126      0,    4,   4
       B.1.1.255    294,  297,   3
       B.1.1.3      103,  106,   3
       B.1.236       74,   77,   3
       B.1.1.39      65,   68,   3
       B.1.1.54      24,   27,   3
       B.1.11        19,   22,   3
       B.1.5.33      18,   21,   3
       B.1.1.114      3,    6,   3
       C.14           1,    4,   3
       B.1.102        0,    3,   3
       B.1.1.62       0,    3,   3
       B.1.1.239      0,    3,   3
       B.1.1.89     146,  148,   2
       B.31         132,  134,   2
       B.1.36.12    100,  102,   2
       B.1.1.294     96,   98,   2
       B.1.1.299     73,   75,   2
       B.1.1.15      69,   71,   2
       B.1.3         26,   28,   2
       B.1.1.86      26,   28,   2
       B.1.1.288     23,   25,   2
       B.1.1.163     22,   24,   2
       B.1.77        21,   23,   2
       B.1.275       20,   22,   2
       B.1.1.133     17,   19,   2
       B.1.1.131     16,   18,   2
       B.6           11,   13,   2
       B.1.1.162      4,    6,   2
       B.1.1.182      3,    5,   2
       B.1.213        2,    4,   2
       B.1.334        0,    2,   2
       B.1.260        0,    2,   2
       B.1.5       2890, 2678,-212
       B.40        2168, 1987,-181
       B.1.1.291    145,    1,-144
       B.1.255      162,   50,-112
       B           1743, 1678, -65
       B.1.1.206     45,    1, -44
       B.1.1.257    218,  179, -39
       B.1.223      231,  198, -33
       B.1.1.25      41,   15, -26
       B.1.1.207     33,    9, -24
       B.1.1.47      29,    9, -20
       B.1.1.151    256,  238, -18
       B.1.88       138,  121, -17
       B.1.1.195     59,   42, -17
       B.1.1.253    371,  355, -16
       B.23         112,   98, -14
       B.1.1.53      15,    1, -14
       B.1.1.216     52,   40, -12
       B.1.1.273     27,   15, -12
       B.1.177.14    14,    2, -12
       B.1.1.152     13,    1, -12
       A.1           31,   20, -11
       B.1.1.64     129,  119, -10
       B.1.178       18,    8, -10
       B.1.182       10,    1,  -9
       B.1.1.31      11,    2,  -9
       B.1.1.80      18,   10,  -8
       B.1.1.237    352,  345,  -7
       H.1           14,    7,  -7
       B.1.1.104     31,   25,  -6
       B.1.1.164    161,  156,  -5
       B.1.1.245    299,  295,  -4
       B.1.215       95,   91,  -4
       B.1.75        90,   86,  -4
       B.1.1.165     69,   65,  -4
       B.1.1.127     33,   29,  -4
       B.1.1.243     26,   22,  -4
       B.1.3.1       20,   16,  -4
       B.1.1.161      9,    5,  -4
       B.29         159,  156,  -3
       B.1.1.29     140,  137,  -3
       B.1.258.5    105,  102,  -3
       B.1.1.193     65,   62,  -3
       B.1.173       29,   26,  -3
       B.1.5.12      22,   19,  -3
       B.1.186        7,    4,  -3
       B.1.212        5,    2,  -3
       B.3.1        555,  553,  -2
       B.1.1.38     223,  221,  -2
       B.1.252      133,  131,  -2
       B.34          73,   71,  -2
       B.1.1.95      30,   28,  -2
       B.4           26,   24,  -2
       B.1.1.261     13,   11,  -2
       B.1.36.13     10,    8,  -2
       B.1.277        9,    7,  -2
       B.1.358        4,    2,  -2
       B.1.1.297      4,    2,  -2
       B.1.1.296    232,  231,  -1
       B.1.1.59     156,  155,  -1
       B.1.1.250     88,   87,  -1
       B.1.1.313     71,   70,  -1
       B.1.1.123     63,   62,  -1
       B.1.81        33,   32,  -1
       B.1.1.166     23,   22,  -1
       B.1.1.260     20,   19,  -1
       B.1.1.187     20,   19,  -1
       B.1.1.266     17,   16,  -1
       B.1.108       16,   15,  -1
       B.1.177.21    12,   11,  -1
       B.1.1.281      6,    5,  -1
       B.1.177.25     4,    3,  -1
       B.1.1.211      4,    3,  -1
       C.13           3,    2,  -1
       B.1.190        3,    2,  -1
       B.1.324        2,    1,  -1
       B.1.1.99       2,    1,  -1
       B.1.1.84       2,    1,  -1
       B.1.1.135      2,    1,  -1
       [/code]
       strain
       occurrance Jan03
       occurrance Jan07
       occurrance between Jan03 and Jan07
       (report date ... ahh, this is useless since we have the sampling
       dates]
       #Post#: 276--------------------------------------------------
       Re: spike-mutations
       By: gsgs Date: January 8, 2021, 11:39 pm
       ---------------------------------------------------------
       >4 spike mutations surveilance picture
       Jan03 :
       Jan08 :
  HTML http://magictour.free.fr/s2ukc-sp.GIF
       growing mutations : A701V , Q23H , L18F , F157L (selected list)
       growing strains : B.1.1.7 , B.1.351 , B.1.177.7 , B.1.177.6
       and one ancient strain "A" appeared without D614G ,
       mutations : F157L , V367F , Q613H , P681R  R102I , (L141F)
       22 sequences from mid-Dec
       
       Jan03 :
       s2ukb1.GIF , aa-mutation-picture of 2443 randomly selected spike
       proteins
       s2ukb-s4.GIF , 676 spike aa
       s2ukb-s5.GIF
       s2ukb-s5b.GIF big , with strain+mutation time-charts
       Jan08 :
       s2ukc-sp.GIF  , mutation picture of 2912 spike aa sequences
       no time-charts of mutations and strains yet
       #Post#: 277--------------------------------------------------
       Re: spike-mutations
       By: gsgs Date: January 9, 2021, 8:46 am
       ---------------------------------------------------------
       mutation table of the 27   C22033T viruses :
       [code]
       po
       00001221011221101122222212202212022
       si
       00124888438716781122233418848808015
       ti
       39361286968985772200646051153870997
       on
       32198787468967486303600924677747080
       
       75453818077475526003114714738879158
       --Index---------------------------------------------------------
       -----------
       1 >Wuhan-Hu-1         ,2019-12-01,00
       ...................................
       3 >England/MILK-CB1C77,2020-12-06,50
       TTATTAA......TTTTTTATTGCTCATCAT....
       4 >England/MILK-CB1C86,2020-12-06,50
       TTATTAA......TTTTTTATTGCTCATCAT....
       5 >England/MILK-CB1C68,2020-12-06,50
       TTATTAA......TTTTTTATTGCTCATCAT....
       2 >England/MILK-C53AC8,2020-12-12,50
       ......A......TTTTTTATTGCTCATCAT....
       6 >England/ALDP-C3D88E,2020-12-10,50
       -...........TTTTTTTATTGCTCATCA-....
       7 >England/MILK-C91897,2020-12-12,50
       ............TTTTTTTATTGCTCATCAT....
       8 >England/CAMC-C70D53,2020-12-16,51
       ...........-TTTTTTTATTGCTCATCAT-...
       9 >England/ALDP-C8B57B,2020-12-16,51
       ............TTTTTTTATTGCTCATCAT....
       10 >England/ALDP-CB55B4,2020-12-20,52
       ........T...TTTTTTTATTGCTCATCAT....
       11 >England/LIVE-DCFF7C,2020-12-26,52
       ........T..-TTTTTT-ATTGCTCATCAT-...
       21 >England/CAMC-BD17BD,2020-11-27,48
       .............TTTTTTATTGCTCATCATTTTT
       20 >England/CAMC-C4380D,2020-12-10,50
       ...........-.TTTTTTATTGCTCATCAT-TTT
       14 >England/CAMC-C470E3,2020-12-10,50
       .............TTTTTTATTGCTCATCATTTTT
       22 >England/QEUH-C3151A,2020-12-11,50
       .............TTTTTTATTGCTCATCATTTTT
       12 >England/QEUH-C53F05,2020-12-11,50
       ...........--TTTTT-ATTGCTCATCAT-T-T
       23 >England/QEUH-C5C7B9,2020-12-14,51
       .............TTTTTTATTGCTCATCATTTTT
       25 >England/ALDP-C8DE41,2020-12-15,51
       .............TTTTTTATTGCTCATCATTTTT
       17 >England/QEUH-C93640,2020-12-16,51
       .............TTTTTTATTGCTCATCATTTTT
       18 >England/ALDP-C8A0A8,2020-12-16,51
       .............TTTTTTATTGCTCATCATTTTT
       19 >England/ALDP-C88D1C,2020-12-16,51
       .............TTTTTTATTGCTCATCATTTTT
       24 >England/QEUH-C7F8BD,2020-12-16,51
       .............T-TTTTATTGCTCATCATTTTT
       26 >England/ALDP-CBF602,2020-12-20,52
       .............TTTTTTATTGCTCATCATTTTT
       29 >England/QEUH-CC37F9,2020-12-21,52
       .............TTTTTTATTGCTCATCATTTTT
       13 >England/ALDP-C3A168,2020-12-08,50
       .........TG..TTTTTTATTGCTCATCATTTTT
       28 >England/ALDP-C8B432,2020-12-16,51
       .........TG-.TTTTTTATTGCTCATCAT-TTT
       27 >England/OXON-F43F7E,2020-12-18,51
       .........TG..TTTTTTATTGCTCATCATTTTT
       15 >England/ALDP-C8CD72,2020-12-14,51
       .......A...R.TTTTTTATTGCTCATCATTTTT
       16 >England/ALDP-C8CD72,2020-12-14,51
       .......A...R.TTTTTTATTGCTCATCATTTTT
       po
       00001221011221101122222212202212022
       si
       00124888438716781122233418848808015
       ti
       39361286968985772200646051153870997
       on
       32198787468967486303600924677747080
       
       75453818077475526003114714738879158
       [/code]
       #Post#: 292--------------------------------------------------
       Re: spike-mutations
       By: gsgs Date: April 3, 2021, 2:14 am
       ---------------------------------------------------------
       [code]
       RBD:319-541
       RBR:395-518
       Bloom : 346,378,417,444,447,455f,484,490,486f
       383f,452,419,384,475,472f
       --------------------------------------------
       (1) mutation in the RBD
       (2) 1000*(4)/(3)
       (3) number of sequences 0324 at cog-UK
       (4) number of sequences 0324 at cog-UK
       (5) #=match in the Bloom-picture
       (1), (2),   (3),   (4) (5)
       E484K,1178,000965,001137  #
       L452R,1330,000263,000350  #
       F490S,1326,000202,000268  #
       P384L,1308,000269,000352  #
       K417N,1243,000393,000489  #
       L455F,1176,000090,000106  #
       S477R,1149,000113,000130
       P384S,1148,000241,000277  #
       T385N,1122,000212,000238
       K458N,3223,000012,000039
       Y449H,2624,000014,000037
       Y449D,1900,000012,000023
       G496S,1464,000032,000047
       A372V,1390,000015,000021
       K417T,1365,000027,000037  #
       F490Y,1304,000016,000021  #
       K529R,1286,000031,000040
       N370H,1277,000032,000041
       R346S,1270,000018,000023  #
       L335F,1258,000042,000053
       E484Q,1238,000079,000098  #
       Q321R,1232,000021,000026
       E324K,1187,000026,000031
       P322S,1183,000032,000038
       Q493K,1160,000018,000021
       K444N,1160,000018,000021  #
       V483F,1155,000070,000081
       [/code]
       *****************************************************